Dataset

Human Genomics Data (1+MG) - SNPs matrix

Whole-genome sequencing data from 100 blood samples that have been collected from a reference cohort reflecting the general Belgian population. A matrix containing Single Nucleotide Variants (SNVs) identified in a sample of 100 BELHES participants. The file is a CSV file with one line per sample (pseudonymised ID) and one column per variant. Column headers are chr:position. Reference genome version used was GRCh38.

Overview

Keywords
genetic population-based Whole-genome
Languages
en
Health Categories
Human genetic, epigenomic and genomic data
Population Coverage
The sample size of the current study is determined by the number of BELHES participants who have signed an informed consent form for the collection of a blood sample and subsequent DNA analysis, and with their blood sample stored in Sciensano’s biobank.
Purposes

  • The primary objective of the project is to obtain DNA sequencing results from residual blood samples that have been collected from a reference cohort reflecting the general Belgian population

Provenance
  • The blood samples, together with their lab ID, have been sent to KULeuven for sequencing and the generated sequencing data are stored at the secured internal network server at Sciensano

Temporal Information

Temporal Coverage
Start
End
Metadata Dates
Issued:
Modified:

Spatial Information

Geographic Coverage
  • BE
NUTS Codes
http://data.europa.eu/nuts/code/BE

Additional Information

Dataset Types
Personal Data
Applicable Legislation
HDAB
Contact Points
Conforms To
Structured Identifiers

Distributions & Resources

Belgian Health Data Agency | Request Form

https://www.hda.belgium.be/en/data_request

Restricted en
Publication Info
License cc-zero1.0
Standards & Languages
Languages en
Conforms To
Distribution Profile
Direct Links
Access URL https://www.hda.belgium.be/en/data_request
Human Genomics Data (1+MG) - SNPs matrix | Data dictionary

https://raw.githubusercontent.com/sciensanogit/SciensanoDataPortal_distributions/refs/heads/main/datasets/1%252BMG-SNP/datadic.ttl

Restricted TURTLE en
Description

Data dictionary (long format). A matrix containing Single Nucleotide Variants (SNVs) identified in a sample of 100 BELHES participants. The file is a CSV file with one line per sample (pseudonymised ID) and one column per variant. Column headers are chr:position. Reference genome version used was GRCh38.

Publication Info
License cc-zero1.0
Technical Details
MIME Type http://www.iana.org/assignments/media-types/text/turtle
Standards & Languages
Languages en
Conforms To
Sample Profile
Direct Links
Download URL Download
Human Genomics Data (1+MG) - SNPs matrix | Illustrative structure (mock)

https://github.com/sciensanogit/SciensanoDataPortal_distributions/blob/main/datasets/1%252BMG-SNP/illustrativestructure-snpmatrix.png

Restricted en
Description

Illustrative structure of a SNP matrix (mock).

Publication Info
License cc-zero1.0
Standards & Languages
Languages en
Conforms To
Sample Profile
Direct Links
Download URL Download
genetic
population-based
Whole-genome